{ "_id": "6a1f1e61b401979e7341fe1e", "Package": "MMD", "Type": "Package", "Title": "Minimal Multilocus Distance (MMD) for Source Attribution and\nLoci Selection", "Version": "1.0.0", "Authors@R": "person(\"Francisco\", \"Perez-Reche\", email = \"fperez-reche@abdn.ac.uk\",\nrole = c(\"aut\", \"cre\"))", "Maintainer": "Francisco Perez-Reche ", "Description": "The aim of the package is two-fold: (i) To implement the\nMMD method for attribution of individuals to sources using the\nHamming distance between multilocus genotypes. (ii) To select\ninformative genetic markers based on information theory\nconcepts (entropy, mutual information and redundancy). The\npackage implements the functions introduced by Perez-Reche, F.\nJ., Rotariu, O., Lopes, B. S., Forbes, K. J. and Strachan, N.\nJ. C. Mining whole genome sequence data to efficiently\nattribute individuals to source populations. Scientific Reports\n10, 12124 (2020) . See more\ndetails and examples in the README file.", "License": "GPL-3", "Encoding": "UTF-8", "VignetteBuilder": "knitr", "RoxygenNote": "7.1.0", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-16 08:22:34 UTC", "User": "root" }, "Author": "Francisco Perez-Reche [aut, cre]", "Repository": "https://fjpreche.r-universe.dev", "Date/Publication": "2021-01-26 12:40:08 UTC", "RemoteUrl": "https://github.com/cran/MMD", "RemoteRef": "HEAD", "RemoteSha": "f083921bc2059fc5a2db492ceb5bd808c7ed6724", "MD5sum": "87e4dba2e76380a6e2e048313ffe236d", "_user": "fjpreche", "_type": "src", "_file": "MMD_1.0.0.tar.gz", "_fileid": "4bdeafd653de60356c12a4853ddc69e0ef34cdbdcde97dd956037fba21e54569", "_filesize": 336886, "_sha256": "4bdeafd653de60356c12a4853ddc69e0ef34cdbdcde97dd956037fba21e54569", "_created": "2026-05-16T08:22:34.000Z", "_published": "2026-06-02T18:18:09.505Z", "_distro": "noble", "_jobs": [ { "job": 79141398501, "time": 111, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "7031928316" }, { "job": 79141398096, "time": 125, "config": "linux-release-x86_64", "r": "4.6.0", "check": "NOTE", "artifact": "7031929473" }, { "job": 79141398052, "time": 197, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "NOTE", "artifact": "7031934634" }, { "job": 79141397613, "time": 115, "config": "macos-release-arm64", "r": "4.6.0", "check": "NOTE", "artifact": "7031928782" }, { "job": 79141397184, "time": 190, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7031917570" }, { "job": 79141397299, "time": 100, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7366225152" }, { "job": 79141398197, "time": 100, "config": "windows-devel", "r": "4.7.0", "check": "NOTE", "artifact": "7031927863" }, { "job": 79141398584, "time": 94, "config": "windows-oldrel", "r": "4.5.3", "check": "NOTE", "artifact": "" }, { "job": 79141398872, "time": 82, "config": "windows-release", "r": "4.6.0", "check": "NOTE", "artifact": "7031925579" } ], "_buildurl": "https://github.com/r-universe/fjpreche/actions/runs/25957152794", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/cran/MMD", "_commit": { "id": "f083921bc2059fc5a2db492ceb5bd808c7ed6724", "author": "Francisco Perez-Reche ", "committer": "cran-robot ", "message": "version 1.0.0\n", "time": 1611664808 }, "_maintainer": { "name": "Francisco Perez-Reche", "email": "fperez-reche@abdn.ac.uk", "login": "fjpreche", "uuid": 36167266 }, "_registered": true, "_dependencies": [ { "package": "e1071", "role": "Imports" }, { "package": "plyr", "role": "Imports" }, { "package": "bigmemory", "role": "Imports" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" } ], "_owner": "cran", "_selfowned": true, "_usedby": 0, "_updates": [], "_tags": [], "_stars": 0, "_contributors": [ { "user": "fjpreche", "count": 1, "uuid": 36167266 } ], "_userbio": { "uuid": 36167266, "type": "user", "name": "Francisco Perez-Reche", "description": "Reader at the School of Natural and Computing Sciences of the University of Aberdeen." }, "_downloads": { "count": 171, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/MMD" }, "_mentions": 18, "_searchresults": 3, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/MMD.html", "manual.pdf" ], "_realowner": "fjpreche", "_cranurl": false, "_releases": [ { "version": "1.0.0", "date": "2021-01-26" } ], "_exports": [ "MMD_attr", "MMD_Entropy", "MMD_Rn" ], "_help": [ { "page": "MMD_attr", "title": "Attribution of individuals to sources using the MMD method", "topics": [ "MMD_attr" ] }, { "page": "MMD_Entropy", "title": "Loci entropies to measure allele diversity", "topics": [ "MMD_Entropy" ] }, { "page": "MMD_Rn", "title": "Loci redundancy in sequences", "topics": [ "MMD_Rn" ] } ], "_rundeps": [ "BH", "bigmemory", "bigmemory.sri", "class", "e1071", "MASS", "plyr", "proxy", "Rcpp", "uuid" ], "_vignettes": [ { "source": "README.Rmd", "filename": "README.html", "title": "Tutorial for the R MMD package", "author": "Francisco Perez-Reche", "engine": "knitr::rmarkdown", "headings": [ "Source attribution", "Setting the parameters for source attribution", "Running the function MMD_attr for source attribution (verbose=FALSE by default even if verbose is not specified; set verbose=TRUE to see a progress bar for computations if you wish):", "Source attribution results:", "Self-attribution", "Setting the parameters", "Self-attribution results", "Selection of informative loci", "Entropy measures", "Outputs of MMD_Entropy", "Redundancy of loci", "Outputs of MMD_Rn", "References" ], "created": "2021-01-26 12:40:08", "modified": "2021-01-26 12:40:08", "commits": 1 } ], "_score": 3, "_indexed": true, "_nocasepkg": "mmd", "_universes": [ "fjpreche" ], "_binaries": [ { "r": "4.5.3", "os": "win", "version": "1.0.0", "date": "2026-04-16T08:37:48.000Z", "commit": "f083921bc2059fc5a2db492ceb5bd808c7ed6724", "fileid": "47f2caa64e3d3f4b1dcd83634aeb4120f8e0c1f17d15b9d0747eb82ae0720f40", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/fjpreche/actions/runs/24500356600" }, { "r": "4.7.0", "os": "linux", "version": "1.0.0", "date": "2026-05-16T08:24:24.000Z", "distro": "noble", "commit": "f083921bc2059fc5a2db492ceb5bd808c7ed6724", "fileid": "9921595d298043e0a7a42d42f458b75e3549e718604692389d44ae8b3f5544c8", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/fjpreche/actions/runs/25957152794" }, { "r": "4.6.0", "os": "linux", "version": "1.0.0", "date": "2026-05-16T08:24:38.000Z", "distro": "noble", "commit": "f083921bc2059fc5a2db492ceb5bd808c7ed6724", "fileid": "8a5a66c169537f5d3bcf209510cb3fa59c42257707c7fb232b1f89bff925e3eb", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/fjpreche/actions/runs/25957152794" }, { "r": "4.5.3", "os": "mac", "version": "1.0.0", "date": "2026-05-16T08:25:32.000Z", "commit": "f083921bc2059fc5a2db492ceb5bd808c7ed6724", "fileid": "ab2683f87ac8b4c6b5dc80fe0b9cfc0eb1fd28e3b82a6b8ef5e72b8c925ad73e", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/fjpreche/actions/runs/25957152794" }, { "r": "4.6.0", "os": "mac", "version": "1.0.0", "date": "2026-05-16T08:24:34.000Z", "commit": "f083921bc2059fc5a2db492ceb5bd808c7ed6724", "fileid": "7899ccdfbf87573be6d2b54159d64d4d352d2c35b572cb186014d264543bdd1d", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/fjpreche/actions/runs/25957152794" }, { "r": "4.7.0", "os": "win", "version": "1.0.0", "date": "2026-05-16T08:24:14.000Z", "commit": "f083921bc2059fc5a2db492ceb5bd808c7ed6724", "fileid": "31e6abc541f00901d862bb900426a2a28a3c492a07cbac9c54fff3cd85852319", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/fjpreche/actions/runs/25957152794" }, { "r": "4.6.0", "os": "win", "version": "1.0.0", "date": "2026-05-16T08:23:52.000Z", "commit": "f083921bc2059fc5a2db492ceb5bd808c7ed6724", "fileid": "5b0c4e63d0247f17b76c5b98c85851f0fbed602fb3603b1c8683bd08f54eef6c", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/fjpreche/actions/runs/25957152794" }, { "r": "4.6.0", "os": "wasm", "version": "1.0.0", "date": "2026-06-02T18:17:48.000Z", "commit": "f083921bc2059fc5a2db492ceb5bd808c7ed6724", "fileid": "05c21f699ee1ef9dd7bba2d70730b541e257eeefa12480bdea3e19e486b45f15", "status": "success", "buildurl": "https://github.com/r-universe/fjpreche/actions/runs/25957152794" } ] }